STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL44609.1Predicted anti-sigma-YlaC factor YlaD, contains Zn-finger domain. (252 aa)    
Predicted Functional Partners:
SCL44610.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
   0.769
SCL48905.1
Hypothetical protein.
  
     0.721
SCL67699.1
Hypothetical protein.
  
     0.692
SCL63410.1
Hypothetical protein.
  
     0.677
SCL55487.1
Hypothetical protein.
  
     0.657
SCL64129.1
Hypothetical protein.
  
     0.652
SCL51763.1
Hypothetical protein; Non-canonical start codon; manually curated.
  
     0.635
SCL62031.1
Protein of unknown function; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.614
SCL46970.1
Protein of unknown function.
  
     0.607
SCL45213.1
Protein of unknown function.
  
     0.604
Your Current Organism:
Micromonospora eburnea
NCBI taxonomy Id: 227316
Other names: DSM 44814, JCM 12345, M. eburnea, Micromonospora eburnea Thawai et al. 2005, Micromonospora sp. LK2-10, Micromonospora sp. LK2-5, Micromonospora sp. LK210, NBRC 101912, PCU 238, PCU:238, strain LK2-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.