STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL44688.1Zn-dependent metalloprotease. (1169 aa)    
Predicted Functional Partners:
SCL44086.1
Para-nitrobenzyl esterase; Belongs to the type-B carboxylesterase/lipase family.
  
 0.791
SCL60565.1
Peptidase_C39 like family protein.
 
 
 0.765
SCL67285.1
Hypothetical protein.
 
 
 0.736
SCL64467.1
Concanavalin A-like lectin/glucanases superfamily protein.
 
 
 0.728
SCL64497.1
Concanavalin A-like lectin/glucanases superfamily protein.
 
 
 0.719
SCL67289.1
Hypothetical protein.
 
 
 0.701
SCL46012.1
Carboxypeptidase regulatory-like domain-containing protein.
 
 
 0.685
SCL50876.1
Ricin-type beta-trefoil lectin domain-containing protein.
 
 
 0.685
SCL67770.1
acyl-CoA thioester hydrolase.
  
     0.681
SCL50880.1
Autotransporter-associated beta strand repeat-containing protein.
    
 0.663
Your Current Organism:
Micromonospora eburnea
NCBI taxonomy Id: 227316
Other names: DSM 44814, JCM 12345, M. eburnea, Micromonospora eburnea Thawai et al. 2005, Micromonospora sp. LK2-10, Micromonospora sp. LK2-5, Micromonospora sp. LK210, NBRC 101912, PCU 238, PCU:238, strain LK2-10
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