STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL44714.1Glutamate or tyrosine decarboxylase. (784 aa)    
Predicted Functional Partners:
SCL61563.1
Glutamate synthase (NADH) large subunit.
     
 0.832
SCL44716.1
Predicted kinase, aminoglycoside phosphotransferase (APT) family.
    
  0.780
SCL44717.1
8-oxo-dGTP diphosphatase; Belongs to the Nudix hydrolase family.
       0.773
SCL45281.1
4-aminobutyrate aminotransferase apoenzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.764
SCL60700.1
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.764
SCL53428.1
Acyl transferase domain-containing protein.
   
 
 0.746
SCL53938.1
Glutamate mutase subunit E.
   
 
 0.746
SCL59297.1
Pimaricinolide synthase PimS1.
   
 
 0.746
SCL44712.1
Glycosyltransferase like family 2.
   
   0.735
SCL53308.1
Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase C.
  
 
 0.723
Your Current Organism:
Micromonospora eburnea
NCBI taxonomy Id: 227316
Other names: DSM 44814, JCM 12345, M. eburnea, Micromonospora eburnea Thawai et al. 2005, Micromonospora sp. LK2-10, Micromonospora sp. LK2-5, Micromonospora sp. LK210, NBRC 101912, PCU 238, PCU:238, strain LK2-10
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