STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL45273.1Glycine/D-amino acid oxidase. (473 aa)    
Predicted Functional Partners:
SCL45270.1
Spermidine/putrescine transport system permease protein.
 
    0.944
SCL62326.1
Aminomethyltransferase.
  
 0.940
SCL45272.1
Spermidine/putrescine transport system permease protein.
 
     0.935
SCL58138.1
Sulfide:quinone oxidoreductase.
   
 0.920
SCL58778.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit.
   
 0.920
SCL45266.1
Spermidine/putrescine transport system substrate-binding protein; Non-canonical start codon; manually curated.
 
   
 0.914
SCL45275.1
Saccharopine dehydrogenase, NADP-dependent.
  
  
 0.847
SCL45277.1
Agmatinase; Belongs to the arginase family.
 
  
 0.845
SCL45259.1
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.843
SCL61563.1
Glutamate synthase (NADH) large subunit.
  
 
 0.799
Your Current Organism:
Micromonospora eburnea
NCBI taxonomy Id: 227316
Other names: DSM 44814, JCM 12345, M. eburnea, Micromonospora eburnea Thawai et al. 2005, Micromonospora sp. LK2-10, Micromonospora sp. LK2-5, Micromonospora sp. LK210, NBRC 101912, PCU 238, PCU:238, strain LK2-10
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