STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL45470.1Transcriptional regulator, PadR family. (170 aa)    
Predicted Functional Partners:
SCL45474.1
FtsX-like permease family protein.
 
     0.938
SCL45472.1
Putative ABC transport system ATP-binding protein.
 
     0.839
SCL65263.1
Sirohydrochlorin ferrochelatase.
   
    0.777
SCL44545.1
FtsX-like permease family protein.
 
   
 0.700
SCL54111.1
Transcriptional regulator, PadR family.
  
     0.594
SCL45468.1
Uncharacterized membrane protein.
       0.537
SCL44547.1
Putative ABC transport system ATP-binding protein.
 
     0.428
SCL67818.1
Hypothetical protein.
  
     0.406
Your Current Organism:
Micromonospora eburnea
NCBI taxonomy Id: 227316
Other names: DSM 44814, JCM 12345, M. eburnea, Micromonospora eburnea Thawai et al. 2005, Micromonospora sp. LK2-10, Micromonospora sp. LK2-5, Micromonospora sp. LK210, NBRC 101912, PCU 238, PCU:238, strain LK2-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.