STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL47824.1Protein of unknown function. (106 aa)    
Predicted Functional Partners:
SCL47818.1
Helix-turn-helix domain-containing protein.
 
     0.885
SCL63731.1
Protein of unknown function.
  
     0.648
SCL49006.1
Protein of unknown function.
  
     0.647
SCL65506.1
Protein of unknown function.
  
     0.611
SCL48238.1
Sporulation-control protein.
  
     0.596
SCL68574.1
Helix-turn-helix domain-containing protein.
 
   
 0.591
SCL47287.1
Sporulation-control protein spo0M.
  
     0.578
SCL47828.1
FtsX-like permease family protein.
       0.559
SCL47832.1
Putative ABC transport system permease protein.
       0.559
SCL47837.1
ABC-type lipoprotein export system, ATPase component.
       0.559
Your Current Organism:
Micromonospora eburnea
NCBI taxonomy Id: 227316
Other names: DSM 44814, JCM 12345, M. eburnea, Micromonospora eburnea Thawai et al. 2005, Micromonospora sp. LK2-10, Micromonospora sp. LK2-5, Micromonospora sp. LK210, NBRC 101912, PCU 238, PCU:238, strain LK2-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.