STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL48039.1SnoaL-like domain-containing protein. (121 aa)    
Predicted Functional Partners:
SCL48034.1
Transcriptional regulator, contains XRE-family HTH domain.
 
     0.860
SCL48045.1
Uncharacterized conserved protein, DUF1330 family.
 
     0.804
SCL64647.1
(R)-ethylmalonyl-CoA mutase.
    
 0.744
SCL52826.1
Transcriptional regulator, XRE family.
 
     0.720
SCL57241.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
  
 
 0.704
SCL53308.1
Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase C.
  
 0.667
SCL56923.1
Acyl transferase domain-containing protein.
  
 0.667
SCL44878.1
Non-heme chloroperoxidase.
 
   
  0.609
SCL44753.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.571
SCL53467.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.571
Your Current Organism:
Micromonospora eburnea
NCBI taxonomy Id: 227316
Other names: DSM 44814, JCM 12345, M. eburnea, Micromonospora eburnea Thawai et al. 2005, Micromonospora sp. LK2-10, Micromonospora sp. LK2-5, Micromonospora sp. LK210, NBRC 101912, PCU 238, PCU:238, strain LK2-10
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