STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL50855.1RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (285 aa)    
Predicted Functional Partners:
SCL50849.1
Putative zinc-finger.
 
 
   0.949
SCL50844.1
ABC-type multidrug transport system, ATPase component.
 
     0.893
SCL50169.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.799
SCL50839.1
Hypothetical protein.
       0.783
SCL44679.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.769
SCL45536.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.760
SCL45067.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.746
SCL57618.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.737
SCL68037.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.725
SCL44658.1
Putative zinc-finger.
 
 
   0.695
Your Current Organism:
Micromonospora eburnea
NCBI taxonomy Id: 227316
Other names: DSM 44814, JCM 12345, M. eburnea, Micromonospora eburnea Thawai et al. 2005, Micromonospora sp. LK2-10, Micromonospora sp. LK2-5, Micromonospora sp. LK210, NBRC 101912, PCU 238, PCU:238, strain LK2-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.