STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL51200.1Nitroreductase family protein. (331 aa)    
Predicted Functional Partners:
SCL48090.1
Nitroreductase family.
 
   
0.845
SCL64318.1
CBS domain-containing protein.
   
  
 0.798
SCL58655.1
MFS transporter, NNP family, nitrate/nitrite transporter.
   
  
 0.787
SCL51195.1
Transcriptional regulator, AraC family.
       0.768
SCL51897.1
Zn-dependent protease (includes SpoIVFB); Belongs to the peptidase M50B family.
   
    0.767
SCL51190.1
Catechol 2,3-dioxygenase.
  
    0.764
SCL51182.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
 
  0.727
SCL51187.1
Transcriptional regulator, TetR family.
       0.672
SCL64152.1
uroporphyrinogen-III C-methyltransferase.
    
 0.656
SCL66731.1
uroporphyrinogen-III C-methyltransferase.
  
 
 0.642
Your Current Organism:
Micromonospora eburnea
NCBI taxonomy Id: 227316
Other names: DSM 44814, JCM 12345, M. eburnea, Micromonospora eburnea Thawai et al. 2005, Micromonospora sp. LK2-10, Micromonospora sp. LK2-5, Micromonospora sp. LK210, NBRC 101912, PCU 238, PCU:238, strain LK2-10
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