STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL55456.1Hypothetical protein. (227 aa)    
Predicted Functional Partners:
SCL45732.1
Hypothetical protein.
  
     0.760
SCL55462.1
Transcriptional regulator, HxlR family.
  
    0.625
SCL57640.1
Nitroreductase.
  
 
  0.567
SCL49204.1
Hypothetical protein.
  
    0.560
SCL55039.1
CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
    0.557
SCL50487.1
Hypothetical protein.
   
    0.523
SCL52031.1
Hypothetical protein.
   
    0.523
SCL44500.1
Nitroreductase.
   
 
  0.508
SCL55534.1
3-hydroxypropanoate dehydrogenase.
   
 
  0.508
SCL67688.1
Nitroreductase.
   
 
  0.508
Your Current Organism:
Micromonospora eburnea
NCBI taxonomy Id: 227316
Other names: DSM 44814, JCM 12345, M. eburnea, Micromonospora eburnea Thawai et al. 2005, Micromonospora sp. LK2-10, Micromonospora sp. LK2-5, Micromonospora sp. LK210, NBRC 101912, PCU 238, PCU:238, strain LK2-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.