STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selAL-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (430 aa)    
Predicted Functional Partners:
selD
Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
 
  
 0.992
SCL55702.1
Selenocysteine-specific elongation factor.
 
  
 0.984
SCL62982.1
seryl-tRNA synthetase.
     
 0.918
SCL55720.1
Formate dehydrogenase major subunit; Contains selenocysteine; manually curated; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   
 0.900
SCL55716.1
Formate dehydrogenase beta subunit.
 
   
 0.891
SCL55710.1
Formate-dependent nitrite reductase, membrane component NrfD.
 
   
 0.858
SCL55697.1
Hypothetical protein.
       0.623
SCL52909.1
Hydrogenase maturation protein, carbamoyl dehydratase HypE.
     
 0.583
SCL56242.1
RyR domain-containing protein.
  
    0.556
SCL55692.1
Putative hemolysin.
       0.531
Your Current Organism:
Micromonospora eburnea
NCBI taxonomy Id: 227316
Other names: DSM 44814, JCM 12345, M. eburnea, Micromonospora eburnea Thawai et al. 2005, Micromonospora sp. LK2-10, Micromonospora sp. LK2-5, Micromonospora sp. LK210, NBRC 101912, PCU 238, PCU:238, strain LK2-10
Server load: low (6%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.