STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL56102.1Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases-containing protein. (376 aa)    
Predicted Functional Partners:
SCL68341.1
N-acetylmuramoyl-L-alanine amidase.
  
 
 0.862
SCL45724.1
Zinc D-Ala-D-Ala carboxypeptidase.
 
  
  0.734
SCL61345.1
Transglycosylase SLT domain-containing protein.
    
 0.719
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
     
 0.699
SCL66505.1
Protein of unknown function.
     
 0.684
SCL66508.1
Protein of unknown function.
     
 0.684
SCL44462.1
L,D-transpeptidase catalytic domain.
    
 0.678
SCL45126.1
Muramoyltetrapeptide carboxypeptidase LdcA (peptidoglycan recycling).
     
 0.643
SCL62499.1
Muramoyltetrapeptide carboxypeptidase.
     
 0.643
SCL51022.1
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases-containing protein.
 
  
0.642
Your Current Organism:
Micromonospora eburnea
NCBI taxonomy Id: 227316
Other names: DSM 44814, JCM 12345, M. eburnea, Micromonospora eburnea Thawai et al. 2005, Micromonospora sp. LK2-10, Micromonospora sp. LK2-5, Micromonospora sp. LK210, NBRC 101912, PCU 238, PCU:238, strain LK2-10
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