Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCL43970.1 | SCL56328.1 | GA0070604_0117 | GA0070604_3391 | Hypothetical protein. | Serine/threonine protein phosphatase PrpC. | 0.817 |
SCL49710.1 | SCL56328.1 | GA0070604_1969 | GA0070604_3391 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Serine/threonine protein phosphatase PrpC. | 0.810 |
SCL49710.1 | SCL61980.1 | GA0070604_1969 | GA0070604_4636 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Serine/threonine protein kinase. | 0.706 |
SCL49710.1 | SCL68560.1 | GA0070604_1969 | GA0070604_6336 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | PASTA domain-containing protein. | 0.717 |
SCL49710.1 | SCL68620.1 | GA0070604_1969 | GA0070604_6354 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Serine/threonine protein kinase. | 0.701 |
SCL49710.1 | fmt | GA0070604_1969 | GA0070604_1968 | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.996 |
SCL56324.1 | SCL56328.1 | GA0070604_3390 | GA0070604_3391 | ADP-ribose pyrophosphatase YjhB, NUDIX family; Belongs to the Nudix hydrolase family. | Serine/threonine protein phosphatase PrpC. | 0.678 |
SCL56324.1 | SCL56333.1 | GA0070604_3390 | GA0070604_3392 | ADP-ribose pyrophosphatase YjhB, NUDIX family; Belongs to the Nudix hydrolase family. | Hypothetical protein. | 0.655 |
SCL56328.1 | SCL43970.1 | GA0070604_3391 | GA0070604_0117 | Serine/threonine protein phosphatase PrpC. | Hypothetical protein. | 0.817 |
SCL56328.1 | SCL49710.1 | GA0070604_3391 | GA0070604_1969 | Serine/threonine protein phosphatase PrpC. | 16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.810 |
SCL56328.1 | SCL56324.1 | GA0070604_3391 | GA0070604_3390 | Serine/threonine protein phosphatase PrpC. | ADP-ribose pyrophosphatase YjhB, NUDIX family; Belongs to the Nudix hydrolase family. | 0.678 |
SCL56328.1 | SCL56333.1 | GA0070604_3391 | GA0070604_3392 | Serine/threonine protein phosphatase PrpC. | Hypothetical protein. | 0.746 |
SCL56328.1 | SCL61980.1 | GA0070604_3391 | GA0070604_4636 | Serine/threonine protein phosphatase PrpC. | Serine/threonine protein kinase. | 0.877 |
SCL56328.1 | SCL62326.1 | GA0070604_3391 | GA0070604_4718 | Serine/threonine protein phosphatase PrpC. | Aminomethyltransferase. | 0.694 |
SCL56328.1 | SCL62769.1 | GA0070604_3391 | GA0070604_4822 | Serine/threonine protein phosphatase PrpC. | 2-oxoisovalerate dehydrogenase E1 component. | 0.971 |
SCL56328.1 | SCL68560.1 | GA0070604_3391 | GA0070604_6336 | Serine/threonine protein phosphatase PrpC. | PASTA domain-containing protein. | 0.582 |
SCL56328.1 | SCL68620.1 | GA0070604_3391 | GA0070604_6354 | Serine/threonine protein phosphatase PrpC. | Serine/threonine protein kinase. | 0.877 |
SCL56328.1 | fmt | GA0070604_3391 | GA0070604_1968 | Serine/threonine protein phosphatase PrpC. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.647 |
SCL56333.1 | SCL56324.1 | GA0070604_3392 | GA0070604_3390 | Hypothetical protein. | ADP-ribose pyrophosphatase YjhB, NUDIX family; Belongs to the Nudix hydrolase family. | 0.655 |
SCL56333.1 | SCL56328.1 | GA0070604_3392 | GA0070604_3391 | Hypothetical protein. | Serine/threonine protein phosphatase PrpC. | 0.746 |
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