STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL60081.1Non-ribosomal peptide synthetase component F. (1158 aa)    
Predicted Functional Partners:
SCL44457.1
Hypothetical protein; Belongs to the cytochrome P450 family.
  
 0.999
SCL48050.1
Cytochrome P450.
  
 0.999
SCL52426.1
Cytochrome P450.
  
 0.999
SCL53219.1
Cytochrome P450.
  
 0.999
SCL53308.1
Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase C.
  
 0.999
SCL53314.1
Ketoacyl-synthetase C-terminal extension.
 
 0.999
SCL53332.1
Amino acid adenylation domain-containing protein; Manually curated.
 
0.999
SCL53411.1
Polyketide synthase 12.
  
 0.999
SCL53418.1
Acyl transferase domain-containing protein.
  
 0.999
SCL53428.1
Acyl transferase domain-containing protein.
  
 0.999
Your Current Organism:
Micromonospora eburnea
NCBI taxonomy Id: 227316
Other names: DSM 44814, JCM 12345, M. eburnea, Micromonospora eburnea Thawai et al. 2005, Micromonospora sp. LK2-10, Micromonospora sp. LK2-5, Micromonospora sp. LK210, NBRC 101912, PCU 238, PCU:238, strain LK2-10
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