STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL63634.1methylglutaconyl-CoA hydratase. (262 aa)    
Predicted Functional Partners:
SCL53308.1
Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase C.
  
 0.906
SCL56923.1
Acyl transferase domain-containing protein.
  
 0.906
SCL57947.1
Amino acid adenylation domain-containing protein.
  
 0.895
SCL60055.1
Condensation domain-containing protein.
  
 0.895
SCL60071.1
AMP-binding enzyme C-terminal domain-containing protein.
  
 0.895
SCL60081.1
Non-ribosomal peptide synthetase component F.
  
 0.895
SCL60147.1
Amino acid adenylation domain-containing protein.
  
 0.895
SCL56897.1
Non-ribosomal peptide synthetase component F.
  
 0.878
SCL54020.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 0.875
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
  
 
   0.873
Your Current Organism:
Micromonospora eburnea
NCBI taxonomy Id: 227316
Other names: DSM 44814, JCM 12345, M. eburnea, Micromonospora eburnea Thawai et al. 2005, Micromonospora sp. LK2-10, Micromonospora sp. LK2-5, Micromonospora sp. LK210, NBRC 101912, PCU 238, PCU:238, strain LK2-10
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