STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL65394.1Ribose-phosphate pyrophosphokinase. (312 aa)    
Predicted Functional Partners:
SCL65185.1
2-oxoglutarate dehydrogenase E1 component.
   
 0.988
SCL62769.1
2-oxoisovalerate dehydrogenase E1 component.
   
 0.985
SCL43908.1
Pyruvate dehydrogenase E1 component beta subunit.
   
 0.960
SCL52328.1
Pyruvate dehydrogenase E1 component beta subunit.
   
 0.960
SCL59404.1
Pyruvate dehydrogenase E1 component beta subunit.
   
 0.960
SCL59750.1
Pyruvate dehydrogenase E1 component beta subunit.
   
 0.960
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.
  
 0.932
SCL61187.1
Transketolase; Belongs to the transketolase family.
   
 
 0.925
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
    
 0.916
SCL52449.1
Ribokinase; Belongs to the carbohydrate kinase PfkB family.
    
 0.915
Your Current Organism:
Micromonospora eburnea
NCBI taxonomy Id: 227316
Other names: DSM 44814, JCM 12345, M. eburnea, Micromonospora eburnea Thawai et al. 2005, Micromonospora sp. LK2-10, Micromonospora sp. LK2-5, Micromonospora sp. LK210, NBRC 101912, PCU 238, PCU:238, strain LK2-10
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