STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANIA_03606Uncharacterized protein. (271 aa)    
Predicted Functional Partners:
ANIA_09120
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.664
spt5
Transcription elongation factor spt5; The spt4-spt5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene (By similarity).
   
 0.663
ANIA_11406
Metallothionein-I gene transcription activator (AFU_orthologue AFUA_4G11970).
    
 0.648
ANIA_02747
DNA-directed RNA polymerase I, II, and III subunit Rpb6 (AFU_orthologue AFUA_1G05160).
    
 0.648
ANIA_00752
RNA polymerase subunit (AFU_orthologue AFUA_1G14110).
    
 0.648
ANIA_11183
DNA-directed RNA polymerases N/8 kDa subunit superfamily (AFU_orthologue AFUA_7G02620).
    
 0.647
ANIA_10362
Polymerase (RNA) II (DNA directed) polypeptide D (AFU_orthologue AFUA_3G08040).
    
 0.647
ANIA_00192
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 0.647
ANIA_06252
RNA polymerase II subunit 3 (AFU_orthologue AFUA_2G13090).
    
 0.647
ANIA_04269
DNA-directed RNA polymerase II subunit RPB11a, putative (AFU_orthologue AFUA_7G03860).
    
 0.647
Your Current Organism:
Aspergillus nidulans
NCBI taxonomy Id: 227321
Other names: A. nidulans FGSC A4, Aspergillus nidulans FGSC A4, Emericella nidulans FGSC A4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.