rpmB protein (Coxiella burnetii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rpmB

LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. (79 aa)

Predicted Functional Partners:

rpmG

0.999

rplU

0.999

rpmA

0.999

rpsF

0.999

rpsR

0.999

rplI

0.999

rpsL

0.998

rpsG

0.998

rpsJ

0.998

rplC

0.998

Your Current Organism:

Coxiella burnetii

NCBI taxonomy Id: 227377
Other names: C. burnetii RSA 493, Coxiella burnetii RSA 493, Coxiella burnetii str. RSA 493

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplC	rplI	CBU_0238	CBU_0867	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family.	0.999
rplC	rplU	CBU_0238	CBU_0385	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.998
rplC	rpmA	CBU_0238	CBU_0386	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.999
rplC	rpmB	CBU_0238	CBU_0291	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.	0.998
rplC	rpmG	CBU_0238	CBU_0290	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L33P.	0.997
rplC	rpsF	CBU_0238	CBU_0864	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.998
rplC	rpsG	CBU_0238	CBU_0234	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.999
rplC	rpsJ	CBU_0238	CBU_0237	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
rplC	rpsL	CBU_0238	CBU_0233	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.	0.999
rplC	rpsR	CBU_0238	CBU_0865	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.999
rplI	rplC	CBU_0867	CBU_0238	LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family.	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.999
rplI	rplU	CBU_0867	CBU_0385	LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.999
rplI	rpmA	CBU_0867	CBU_0386	LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family.	LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.998
rplI	rpmB	CBU_0867	CBU_0291	LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family.	LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.	0.999
rplI	rpmG	CBU_0867	CBU_0290	LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family.	LSU ribosomal protein L33P.	0.994
rplI	rpsF	CBU_0867	CBU_0864	LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.999
rplI	rpsG	CBU_0867	CBU_0234	LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family.	SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.998
rplI	rpsJ	CBU_0867	CBU_0237	LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.998
rplI	rpsL	CBU_0867	CBU_0233	LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family.	SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.	0.996
rplI	rpsR	CBU_0867	CBU_0865	LSU ribosomal protein L9P; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family.	SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.999