Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CBU_0566 | CBU_0568 | CBU_0566 | CBU_0568 | Transporter, MFS superfamily. | PhoH-like protein. | 0.605 |
CBU_0566 | CBU_0570 | CBU_0566 | CBU_0570 | Transporter, MFS superfamily. | Amino acid permease. | 0.561 |
CBU_0566 | cutE | CBU_0566 | CBU_0564 | Transporter, MFS superfamily. | Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. | 0.639 |
CBU_0566 | miaB | CBU_0566 | CBU_0569 | Transporter, MFS superfamily. | tRNA 2-methylthioadenosine synthase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.603 |
CBU_0566 | ybeY | CBU_0566 | CBU_0567 | Transporter, MFS superfamily. | Hypothetical metal-binding protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.605 |
CBU_0568 | CBU_0566 | CBU_0568 | CBU_0566 | PhoH-like protein. | Transporter, MFS superfamily. | 0.605 |
CBU_0568 | CBU_0570 | CBU_0568 | CBU_0570 | PhoH-like protein. | Amino acid permease. | 0.713 |
CBU_0568 | cutE | CBU_0568 | CBU_0564 | PhoH-like protein. | Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. | 0.827 |
CBU_0568 | miaB | CBU_0568 | CBU_0569 | PhoH-like protein. | tRNA 2-methylthioadenosine synthase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.898 |
CBU_0568 | ybeY | CBU_0568 | CBU_0567 | PhoH-like protein. | Hypothetical metal-binding protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.986 |
CBU_0570 | CBU_0566 | CBU_0570 | CBU_0566 | Amino acid permease. | Transporter, MFS superfamily. | 0.561 |
CBU_0570 | CBU_0568 | CBU_0570 | CBU_0568 | Amino acid permease. | PhoH-like protein. | 0.713 |
CBU_0570 | cutE | CBU_0570 | CBU_0564 | Amino acid permease. | Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. | 0.471 |
CBU_0570 | miaB | CBU_0570 | CBU_0569 | Amino acid permease. | tRNA 2-methylthioadenosine synthase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.718 |
CBU_0570 | ybeY | CBU_0570 | CBU_0567 | Amino acid permease. | Hypothetical metal-binding protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.713 |
apbC | miaB | CBU_1689 | CBU_0569 | Iron-sulfur cluster assembly/repair protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. | tRNA 2-methylthioadenosine synthase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.658 |
cutE | CBU_0566 | CBU_0564 | CBU_0566 | Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. | Transporter, MFS superfamily. | 0.639 |
cutE | CBU_0568 | CBU_0564 | CBU_0568 | Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. | PhoH-like protein. | 0.827 |
cutE | CBU_0570 | CBU_0564 | CBU_0570 | Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. | Amino acid permease. | 0.471 |
cutE | miaB | CBU_0564 | CBU_0569 | Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. | tRNA 2-methylthioadenosine synthase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.618 |
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