Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CBU_0744 | CBU_0745 | CBU_0744 | CBU_0745 | Hpr(Ser) kinase; Phosphatase. | Ribosome-associated factor Y. | 0.818 |
CBU_0744 | CBU_0746 | CBU_0744 | CBU_0746 | Hpr(Ser) kinase; Phosphatase. | LPS ABC transporter ATP-binding protein. | 0.603 |
CBU_0744 | CBU_0747 | CBU_0744 | CBU_0747 | Hpr(Ser) kinase; Phosphatase. | LPS ABC transporter periplasmic component. | 0.625 |
CBU_0744 | CBU_0749 | CBU_0744 | CBU_0749 | Hpr(Ser) kinase; Phosphatase. | 3-deoxy-manno-octulosonate-8-phosphatase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | 0.478 |
CBU_0744 | CBU_0750 | CBU_0744 | CBU_0750 | Hpr(Ser) kinase; Phosphatase. | Arabinose-5-phosphate isomerase. | 0.554 |
CBU_0744 | lgt | CBU_0744 | CBU_1549 | Hpr(Ser) kinase; Phosphatase. | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | 0.538 |
CBU_0744 | lptC | CBU_0744 | CBU_0748 | Hpr(Ser) kinase; Phosphatase. | Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. | 0.492 |
CBU_0744 | ptsH | CBU_0744 | CBU_0743 | Hpr(Ser) kinase; Phosphatase. | Phosphocarrier protein HPr. | 0.963 |
CBU_0745 | CBU_0744 | CBU_0745 | CBU_0744 | Ribosome-associated factor Y. | Hpr(Ser) kinase; Phosphatase. | 0.818 |
CBU_0745 | CBU_0746 | CBU_0745 | CBU_0746 | Ribosome-associated factor Y. | LPS ABC transporter ATP-binding protein. | 0.634 |
CBU_0745 | CBU_0747 | CBU_0745 | CBU_0747 | Ribosome-associated factor Y. | LPS ABC transporter periplasmic component. | 0.599 |
CBU_0745 | CBU_0749 | CBU_0745 | CBU_0749 | Ribosome-associated factor Y. | 3-deoxy-manno-octulosonate-8-phosphatase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | 0.478 |
CBU_0745 | CBU_0750 | CBU_0745 | CBU_0750 | Ribosome-associated factor Y. | Arabinose-5-phosphate isomerase. | 0.566 |
CBU_0745 | lptC | CBU_0745 | CBU_0748 | Ribosome-associated factor Y. | Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. | 0.491 |
CBU_0745 | ptsH | CBU_0745 | CBU_0743 | Ribosome-associated factor Y. | Phosphocarrier protein HPr. | 0.821 |
CBU_0746 | CBU_0744 | CBU_0746 | CBU_0744 | LPS ABC transporter ATP-binding protein. | Hpr(Ser) kinase; Phosphatase. | 0.603 |
CBU_0746 | CBU_0745 | CBU_0746 | CBU_0745 | LPS ABC transporter ATP-binding protein. | Ribosome-associated factor Y. | 0.634 |
CBU_0746 | CBU_0747 | CBU_0746 | CBU_0747 | LPS ABC transporter ATP-binding protein. | LPS ABC transporter periplasmic component. | 0.957 |
CBU_0746 | CBU_0749 | CBU_0746 | CBU_0749 | LPS ABC transporter ATP-binding protein. | 3-deoxy-manno-octulosonate-8-phosphatase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | 0.696 |
CBU_0746 | CBU_0750 | CBU_0746 | CBU_0750 | LPS ABC transporter ATP-binding protein. | Arabinose-5-phosphate isomerase. | 0.810 |
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