Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CBU_0037a | CBU_0609 | CBU_0037a | CBU_0609 | Hypothetical protein. | Mevalonate kinase. | 0.529 |
CBU_0037a | CBU_1685 | CBU_0037a | CBU_1685 | Hypothetical protein. | Hypothetical protein. | 0.520 |
CBU_0037a | mvaD | CBU_0037a | CBU_0607 | Hypothetical protein. | Diphosphomevalonate decarboxylase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP). | 0.523 |
CBU_0037a | thiI | CBU_0037a | CBU_1181 | Hypothetical protein. | Thiamine biosynthesis protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.530 |
CBU_0609 | CBU_0037a | CBU_0609 | CBU_0037a | Mevalonate kinase. | Hypothetical protein. | 0.529 |
CBU_0609 | CBU_1685 | CBU_0609 | CBU_1685 | Mevalonate kinase. | Hypothetical protein. | 0.560 |
CBU_0609 | mvaD | CBU_0609 | CBU_0607 | Mevalonate kinase. | Diphosphomevalonate decarboxylase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP). | 0.992 |
CBU_0609 | thiI | CBU_0609 | CBU_1181 | Mevalonate kinase. | Thiamine biosynthesis protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.569 |
CBU_1055 | thiI | CBU_1055 | CBU_1181 | Putative competence-damage protein; Belongs to the CinA family. | Thiamine biosynthesis protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.759 |
CBU_1180 | iscS | CBU_1180 | CBU_1182 | Hypothetical protein. | Selenocysteine lyase. | 0.651 |
CBU_1180 | thiI | CBU_1180 | CBU_1181 | Hypothetical protein. | Thiamine biosynthesis protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.651 |
CBU_1685 | CBU_0037a | CBU_1685 | CBU_0037a | Hypothetical protein. | Hypothetical protein. | 0.520 |
CBU_1685 | CBU_0609 | CBU_1685 | CBU_0609 | Hypothetical protein. | Mevalonate kinase. | 0.560 |
CBU_1685 | mvaD | CBU_1685 | CBU_0607 | Hypothetical protein. | Diphosphomevalonate decarboxylase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP). | 0.556 |
CBU_1685 | thiI | CBU_1685 | CBU_1181 | Hypothetical protein. | Thiamine biosynthesis protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.561 |
iscS | CBU_1180 | CBU_1182 | CBU_1180 | Selenocysteine lyase. | Hypothetical protein. | 0.651 |
iscS | nifS | CBU_1182 | CBU_1129 | Selenocysteine lyase. | Selenocysteine lyase. | 0.912 |
iscS | thiI | CBU_1182 | CBU_1181 | Selenocysteine lyase. | Thiamine biosynthesis protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.990 |
mvaD | CBU_0037a | CBU_0607 | CBU_0037a | Diphosphomevalonate decarboxylase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP). | Hypothetical protein. | 0.523 |
mvaD | CBU_0609 | CBU_0607 | CBU_0609 | Diphosphomevalonate decarboxylase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP). | Mevalonate kinase. | 0.992 |
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