Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CBU_0745 | ptsH | CBU_0745 | CBU_0743 | Ribosome-associated factor Y. | Phosphocarrier protein HPr. | 0.821 |
CBU_0745 | ptsP | CBU_0745 | CBU_1550 | Ribosome-associated factor Y. | Phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family. | 0.440 |
CBU_0745 | trmU | CBU_0745 | CBU_1147 | Ribosome-associated factor Y. | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.577 |
CBU_1548 | CBU_1552 | CBU_1548 | CBU_1552 | Hypothetical membrane spanning protein. | Hypothetical protein. | 0.487 |
CBU_1548 | lgt | CBU_1548 | CBU_1549 | Hypothetical membrane spanning protein. | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | 0.773 |
CBU_1548 | ptsP | CBU_1548 | CBU_1550 | Hypothetical membrane spanning protein. | Phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family. | 0.608 |
CBU_1548 | rppH | CBU_1548 | CBU_1551 | Hypothetical membrane spanning protein. | Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical); Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; In the C-terminal section; belongs to the Nudix hydrolase family. RppH subfamily. | 0.608 |
CBU_1548 | thyA | CBU_1548 | CBU_1547 | Hypothetical membrane spanning protein. | Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.773 |
CBU_1552 | CBU_1548 | CBU_1552 | CBU_1548 | Hypothetical protein. | Hypothetical membrane spanning protein. | 0.487 |
CBU_1552 | CBU_1552a | CBU_1552 | CBU_1552a | Hypothetical protein. | Hypothetical protein. | 0.560 |
CBU_1552 | lgt | CBU_1552 | CBU_1549 | Hypothetical protein. | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | 0.487 |
CBU_1552 | ptsP | CBU_1552 | CBU_1550 | Hypothetical protein. | Phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family. | 0.610 |
CBU_1552 | rppH | CBU_1552 | CBU_1551 | Hypothetical protein. | Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical); Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; In the C-terminal section; belongs to the Nudix hydrolase family. RppH subfamily. | 0.610 |
CBU_1552 | thyA | CBU_1552 | CBU_1547 | Hypothetical protein. | Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.487 |
CBU_1552a | CBU_1552 | CBU_1552a | CBU_1552 | Hypothetical protein. | Hypothetical protein. | 0.560 |
CBU_1552a | ptsP | CBU_1552a | CBU_1550 | Hypothetical protein. | Phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family. | 0.451 |
CBU_1552a | rppH | CBU_1552a | CBU_1551 | Hypothetical protein. | Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical); Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; In the C-terminal section; belongs to the Nudix hydrolase family. RppH subfamily. | 0.451 |
lgt | CBU_1548 | CBU_1549 | CBU_1548 | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | Hypothetical membrane spanning protein. | 0.773 |
lgt | CBU_1552 | CBU_1549 | CBU_1552 | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | Hypothetical protein. | 0.487 |
lgt | ptsP | CBU_1549 | CBU_1550 | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | Phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family. | 0.647 |
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