Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CBU_0735 | CBU_1233 | CBU_0735 | CBU_1233 | Uridine phosphorylase. | 5'-nucleotidase. | 0.900 |
CBU_0735 | CBU_1374 | CBU_0735 | CBU_1374 | Uridine phosphorylase. | Cytidine/deoxycytidylate deaminase family protein. | 0.499 |
CBU_0735 | surE | CBU_0735 | CBU_1671 | Uridine phosphorylase. | Acid phosphatase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.901 |
CBU_0735 | tdk | CBU_0735 | CBU_2069 | Uridine phosphorylase. | Thymidine kinase. | 0.926 |
CBU_1233 | CBU_0735 | CBU_1233 | CBU_0735 | 5'-nucleotidase. | Uridine phosphorylase. | 0.900 |
CBU_1233 | CBU_1374 | CBU_1233 | CBU_1374 | 5'-nucleotidase. | Cytidine/deoxycytidylate deaminase family protein. | 0.900 |
CBU_1233 | dut | CBU_1233 | CBU_0293 | 5'-nucleotidase. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.900 |
CBU_1233 | surE | CBU_1233 | CBU_1671 | 5'-nucleotidase. | Acid phosphatase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.900 |
CBU_1233 | tdk | CBU_1233 | CBU_2069 | 5'-nucleotidase. | Thymidine kinase. | 0.900 |
CBU_1233 | thyA | CBU_1233 | CBU_1547 | 5'-nucleotidase. | Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.900 |
CBU_1233 | tmk | CBU_1233 | CBU_0499 | 5'-nucleotidase. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.900 |
CBU_1374 | CBU_0735 | CBU_1374 | CBU_0735 | Cytidine/deoxycytidylate deaminase family protein. | Uridine phosphorylase. | 0.499 |
CBU_1374 | CBU_1233 | CBU_1374 | CBU_1233 | Cytidine/deoxycytidylate deaminase family protein. | 5'-nucleotidase. | 0.900 |
CBU_1374 | dut | CBU_1374 | CBU_0293 | Cytidine/deoxycytidylate deaminase family protein. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.900 |
CBU_1374 | surE | CBU_1374 | CBU_1671 | Cytidine/deoxycytidylate deaminase family protein. | Acid phosphatase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.900 |
CBU_1374 | tdk | CBU_1374 | CBU_2069 | Cytidine/deoxycytidylate deaminase family protein. | Thymidine kinase. | 0.904 |
CBU_1374 | thyA | CBU_1374 | CBU_1547 | Cytidine/deoxycytidylate deaminase family protein. | Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.923 |
CBU_1374 | tmk | CBU_1374 | CBU_0499 | Cytidine/deoxycytidylate deaminase family protein. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.902 |
CBU_2070 | tdk | CBU_2070 | CBU_2069 | Chorismate mutase family protein. | Thymidine kinase. | 0.737 |
dut | CBU_1233 | CBU_0293 | CBU_1233 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 5'-nucleotidase. | 0.900 |
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