Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CBU_0586 | asnB-1 | CBU_0586 | CBU_0831 | Pyridine nucleotide-disulfide oxidoreductase family. | Asparagine synthetase (glutamine-hydrolyzing). | 0.440 |
CBU_0586 | asnB-2 | CBU_0586 | CBU_0840 | Pyridine nucleotide-disulfide oxidoreductase family. | Asparagine synthetase family protein. | 0.440 |
CBU_0586 | carA | CBU_0586 | CBU_1282 | Pyridine nucleotide-disulfide oxidoreductase family. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.869 |
CBU_0586 | carB | CBU_0586 | CBU_1281 | Pyridine nucleotide-disulfide oxidoreductase family. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.970 |
CBU_0586 | pyrB | CBU_0586 | CBU_2095 | Pyridine nucleotide-disulfide oxidoreductase family. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.927 |
CBU_0586 | pyrD | CBU_0586 | CBU_0971 | Pyridine nucleotide-disulfide oxidoreductase family. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.999 |
CBU_0586 | pyrE | CBU_0586 | CBU_0296 | Pyridine nucleotide-disulfide oxidoreductase family. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.846 |
CBU_0586 | pyrF | CBU_0586 | CBU_0531 | Pyridine nucleotide-disulfide oxidoreductase family. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.946 |
asnB-1 | CBU_0586 | CBU_0831 | CBU_0586 | Asparagine synthetase (glutamine-hydrolyzing). | Pyridine nucleotide-disulfide oxidoreductase family. | 0.440 |
asnB-1 | asnB-2 | CBU_0831 | CBU_0840 | Asparagine synthetase (glutamine-hydrolyzing). | Asparagine synthetase family protein. | 0.939 |
asnB-1 | carB | CBU_0831 | CBU_1281 | Asparagine synthetase (glutamine-hydrolyzing). | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.475 |
asnB-1 | purA | CBU_0831 | CBU_0998 | Asparagine synthetase (glutamine-hydrolyzing). | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.912 |
asnB-1 | pyrB | CBU_0831 | CBU_2095 | Asparagine synthetase (glutamine-hydrolyzing). | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.912 |
asnB-2 | CBU_0586 | CBU_0840 | CBU_0586 | Asparagine synthetase family protein. | Pyridine nucleotide-disulfide oxidoreductase family. | 0.440 |
asnB-2 | asnB-1 | CBU_0840 | CBU_0831 | Asparagine synthetase family protein. | Asparagine synthetase (glutamine-hydrolyzing). | 0.939 |
asnB-2 | carB | CBU_0840 | CBU_1281 | Asparagine synthetase family protein. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.475 |
asnB-2 | purA | CBU_0840 | CBU_0998 | Asparagine synthetase family protein. | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.912 |
asnB-2 | pyrB | CBU_0840 | CBU_2095 | Asparagine synthetase family protein. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.912 |
carA | CBU_0586 | CBU_1282 | CBU_0586 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Pyridine nucleotide-disulfide oxidoreductase family. | 0.869 |
carA | carB | CBU_1282 | CBU_1281 | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.999 |
page 1 of 4