STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sctJType III secretion protein SctJ; Similar to GB:L13940, PID:295432, and SP:P54297; identified by sequence similarity; putative. (330 aa)    
Predicted Functional Partners:
sctT
Type III secretion inner membrane protein SctT; Identified by match to PFAM protein family HMM PF02537.
 
 
 0.973
sctR
Type III secretion inner membrane protein SctR; Similar to GB:X05302; identified by sequence similarity; putative.
 
 
 0.966
sctV
Type III secretion inner membrane protein SctV; Similar to GB:L27528, SP:P38098, PID:440837, PID:451651, and PID:1750385; identified by sequence similarity; putative.
 
 
 0.923
CCA_00740
Type III secretion chaperone; Similar to GB:M74042, PID:454843, and SP:P50928; identified by sequence similarity; putative.
 
  
 0.891
sctL
Type III secretion translocase sctL; Similar to GB:X05302; identified by sequence similarity; putative.
 
  
 0.888
CCA_00030
FHA domain protein; Identified by match to PFAM protein family HMM PF04203.
 
  
 0.887
gspD
General secretion pathway protein D; Similar to GB:X73124, SP:P39587, PID:413943, and GB:AL009126; identified by sequence similarity; putative.
 
 
 0.862
sctC
Type III secretion protein SctC; Identified by match to PFAM protein family HMM PF02484; Belongs to the bacterial secretin family.
 
 
 0.851
CCA_00936
Conserved hypothetical protein; Similar to GB:L13940, PID:295432, SP:P54297, GB:L13940, PID:295432, and SP:P54297; identified by sequence similarity; putative.
       0.824
sctQ
Type III secretion translocase SctQ; Identified by match to PFAM protein family HMM PF01052.
 
  
 0.798
Your Current Organism:
Chlamydia caviae
NCBI taxonomy Id: 227941
Other names: C. caviae GPIC, Chlamydia caviae GPIC, Chlamydophila caviae GPIC, Chlamydophila caviae str. GPIC
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.