STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCA_01002Conserved hypothetical protein; Identified by match to TIGR protein family HMM TIGR01000; Belongs to the UPF0242 family. (401 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
  
 0.665
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
       0.498
CCA_01004
Conserved hypothetical protein; Similar to GB:M22916, GB:L10505, SP:P39790, PID:143210, PID:143702, and GB:AL009126; identified by sequence similarity; putative.
       0.483
folKP
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate synthase; Identified by match to TIGR protein family HMM TIGR01498; In the N-terminal section; belongs to the HPPK family.
       0.409
folB
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
       0.409
CCA_00997
Conserved hypothetical protein; Similar to GP:8979133; identified by sequence similarity; putative.
       0.402
folA
Dihydrofolate reductase; Identified by match to PFAM protein family HMM PF00186; Belongs to the dihydrofolate reductase family.
       0.402
Your Current Organism:
Chlamydia caviae
NCBI taxonomy Id: 227941
Other names: C. caviae GPIC, Chlamydia caviae GPIC, Chlamydophila caviae GPIC, Chlamydophila caviae str. GPIC
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.