STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PNOK_0032600Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family. (1776 aa)    
Predicted Functional Partners:
PNOK_0922400
CPII coat sec24.
   
 0.999
PNOK_0960600
WD40 domain containing protein; Belongs to the WD repeat SEC13 family.
    
 0.996
PNOK_0933100
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.976
PNOK_0900600
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.976
PNOK_0303500
WD40 domain containing protein.
   
 0.976
PNOK_0839500
Sec24.
   
 0.973
PNOK_0205100
Heterokaryon incompatibility HET-C.
   
 0.973
PNOK_0104600
GTP-binding sar1; Belongs to the small GTPase superfamily. SAR1 family.
    
 0.965
PNOK_0045700
RNA polymerase II-associated.
    
 0.887
PNOK_0314500
Transport Sec22; Belongs to the synaptobrevin family.
   
 
 0.876
Your Current Organism:
Pyrrhoderma noxium
NCBI taxonomy Id: 2282107
Other names: Fomes noxius, P. noxium, Phellinidium noxium, Phellinus noxius, Pyrrhoderma noxium (Corner) L.W. Zhou & Y.C. Dai, 2018
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