STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0053Protocatechuate 3,4-dioxygenase subunit beta. (261 aa)    
Predicted Functional Partners:
RMCC_0051
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.998
RMCC_0052
Protocatechuate 3,4-dioxygenase subunit alpha.
 
 
0.998
RMCC_0050
4-carboxymuconolactone decarboxylase.
 
 
 0.977
RMCC_1032
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase.
  
 
 0.865
RMCC_0058
Sugar phosphate isomerase/epimerase.
 
  
 0.844
RMCC_6303
4-carboxymuconolactone decarboxylase.
 
 
 0.821
RMCC_0054
Regulatory proteins IclR.
 
   
 0.758
RMCC_6450
Xylose isomerase domain protein TIM barrel.
 
  
 0.757
RMCC_0047
Peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin.
       0.645
RMCC_0048
seC-C motif domain-containing protein; Belongs to the UPF0225 family.
       0.645
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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