Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0076Uncharacterized protein. (91 aa)    
Predicted Functional Partners:
RMCC_0079
Selenophosphate synthetase.
 
     0.969
RMCC_0074
DsrE family protein.
 
     0.955
RMCC_0078
Radical SAM protein.
 
     0.953
RMCC_0077
Flavoprotein, K+ transport.
 
     0.951
RMCC_0075
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
 
  0.938
RMCC_0080
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
 
  0.933
RMCC_0081
Glycosyl transferase family protein.
 
   0.915
RMCC_1069
Hypothetical protein.
 
     0.632
RMCC_1072
Nitrilase.
 
 
  0.572
atpG
F0F1 ATP synthase subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
   0.475
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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