STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0127AraC family transcriptional regulator. (233 aa)    
Predicted Functional Partners:
RMCC_0126
Sterol desaturase.
 
     0.877
RMCC_6588
Sterol desaturase.
 
     0.721
RMCC_3239
Fatty acid hydroxylase.
 
     0.698
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.671
RMCC_0122
Cadmium resistance transporter.
 
     0.637
RMCC_0129
Uncharacterized protein.
 
     0.633
RMCC_0125
ArsR family transcriptional regulator.
 
    0.631
gltB
Glutamate synthase (NADPH/NADH) large chain.
    
  0.617
RMCC_6293
Ferredoxin-dependent glutamate synthase [NADPH] large subunit gltB.
    
  0.617
RMCC_3883
Oxidoreductase subunit alpha.
     
 0.588
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.