STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0193Putative integrase; Belongs to the 'phage' integrase family. (378 aa)    
Predicted Functional Partners:
RMCC_0192
Putative recombinase.
       0.814
RMCC_0191
Putative ATP-dependent DNA helicase.
       0.541
RMCC_4760
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.535
RMCC_6655
ABC-type Fe3+ transport system, periplasmic component.
  
     0.479
RMCC_1343
Uncharacterized protein.
 
     0.454
RMCC_2689
Collagen-like protein.
  
  
  0.426
RMCC_3483
Uncharacterized protein.
  
    0.415
RMCC_3761
Helicase associated domain protein.
  
     0.408
RMCC_3749
Type VII secretion integral membrane protein Ecc D.
  
     0.401
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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