STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0210Phosphotyrosine protein phosphatase ptpA; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (156 aa)    
Predicted Functional Partners:
RMCC_6754
Phosphotyrosine protein phosphatase PtpB.
     
 0.939
RMCC_0211
HAD family hydrolase.
     
 0.871
RMCC_0209
Transmembrane protein.
       0.805
RMCC_0120
Zn-dependent hydrolase.
   
   0.754
RMCC_3908
Beta-lactamase domain-containing protein.
   
   0.754
RMCC_1145
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.678
RMCC_2588
Thioredoxin.
  
 
 0.678
RMCC_3559
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.678
RMCC_3906
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.678
ybeY
Metalloprotease; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
   0.673
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.