STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0262Glycerate kinase; Belongs to the glycerate kinase type-1 family. (353 aa)    
Predicted Functional Partners:
gpmA
Phosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.892
RMCC_1489
NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
  0.887
RMCC_3670
Aldehyde dehydrogenase.
   
 
  0.887
RMCC_6033
Piperideine-6-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
  0.887
RMCC_6633
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
  0.887
RMCC_6759
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
  0.887
RMCC_2551
2-hydroxyacid dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.789
RMCC_0263
Iron-sulfur cluster biosynthesis protein; Belongs to the HesB/IscA family.
       0.782
RMCC_1729
D-isomer specific 2-hydroxyacid dehydrogenase.
    
 0.775
RMCC_3322
Lactate dehydrogenase-like oxidoreductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.775
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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