STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0280Glycoside hydrolase family protein. (415 aa)    
Predicted Functional Partners:
RMCC_5467
Lipid A biosynthesis lauroyl acyltransferase.
 
  
 0.985
RMCC_0279
Uncharacterized protein.
       0.877
RMCC_5466
Alpha-mannosyltransferase pimA.
  
  
0.871
RMCC_2881
Glycosyl transferase.
     
0.847
RMCC_0278
Cell wall-associated hydrolase.
 
   
 0.844
glgB
Glycogen branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.751
RMCC_3121
Maltooligosyltrehalose trehalohydrolase treZ.
   
 0.687
RMCC_0090
ATP-dependent DNA helicase II uvrD2.
    
 
 0.684
RMCC_0563
Hypothetical protein.
   
 
 0.676
RMCC_5946
Nucleoside-diphosphate-sugar pyrophosphorylase family protein.
 
 0.635
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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