STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0318NAD-dependent nucleoside-diphosphate sugar epimerase. (451 aa)    
Predicted Functional Partners:
RMCC_4195
Tryptophan-rich sensory protein.
  
    0.706
RMCC_6706
3-demethylubiquinone-9 3-methyltransferase.
  
    0.560
RMCC_0317
Hypothetical protein.
       0.557
RMCC_2056
Transferase.
       0.522
RMCC_0032
Uncharacterized protein.
  
    0.517
RMCC_4484
Acetyltransferase.
  
    0.517
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
    0.498
arcA
Arginine deiminase arcA.
   
    0.493
arcA-2
Arginine deiminase.
   
    0.493
RMCC_0758
Uncharacterized protein.
  
    0.432
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.