STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0324Integral membrane protein. (508 aa)    
Predicted Functional Partners:
RMCC_0322
C4-dicarboxylate ABC transporter substrate-bindi ng protein.
 
 
 0.997
RMCC_0323
Integral membrane protein.
 
 
 0.995
RMCC_0325
Universal stress protein UspA-like protein.
 
     0.866
RMCC_0320
Response regulator of citrate/malate metabolism.
 
     0.840
RMCC_0321
Signal transduction histidine kinase regulating citrate/malate metabolism.
 
     0.828
RMCC_5510
TRAP C4-dicarboxylate transporter permease DctM.
  
  
  0.713
RMCC_0326
TM2 domain-containing protein.
       0.507
RMCC_0327
Protein of unknown function.
       0.507
RMCC_4406
Two-component system, sensory transduction histidine kinase.
 
     0.454
RMCC_1862
Putative excisionase.
    
  0.442
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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