STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0367Beta-lactamase domain protein. (283 aa)    
Predicted Functional Partners:
RMCC_0072
Molybdopterin biosynthesis-like protein MoeZ.
  
 0.629
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
      
 0.613
pks5-2
Polyketide synthase pks5.
   
 0.527
RMCC_6601
Beta-ketoacyl synthase.
   
 0.527
RMCC_0366
TetR family transcriptional regulator.
       0.507
RMCC_1013
Polyketide synthetase mbtD.
   
 0.504
RMCC_5617
Transcriptional regulatory protein.
    
   0.489
RMCC_0798
Glyoxalase/bleomycin resistance protein.
  
  
  0.488
RMCC_0817
2,3-dihydroxybiphenyl-1,2-dioxygenase.
  
  
  0.449
RMCC_0838
Biphenyl-2,3-diol 1,2-dioxygenase.
  
  
  0.447
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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