STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0438TetR family transcriptional regulator. (211 aa)    
Predicted Functional Partners:
RMCC_1156
Transcriptional regulator.
  
    0.781
RMCC_3336
Chromosome replication initiation inhibitor protein; Belongs to the LysR transcriptional regulatory family.
   
   0.776
RMCC_3571
Transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
   
    0.766
RMCC_4974
Transcriptional regulator.
   
    0.766
RMCC_3917
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
   0.765
RMCC_2280
Transcriptional repressor sirR.
   
    0.764
RMCC_0985
Ferric uptake regulation protein furB; Belongs to the Fur family.
   
  
 0.758
RMCC_4120
Transcriptional regulator.
   
    0.757
RMCC_6318
TetR family transcriptional regulator.
   
    0.756
RMCC_6697
Regulatory proteins IclR.
   
    0.755
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.