STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0447TetR family transcriptional regulator. (170 aa)    
Predicted Functional Partners:
RMCC_0445
Uncharacterized protein.
       0.659
RMCC_0444
Uncharacterized protein.
       0.655
RMCC_0446
Uncharacterized protein; Belongs to the aldehyde dehydrogenase family.
       0.648
RMCC_0443
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
  
    0.481
RMCC_1205
Putative membrane protein (DUF2207), precursor.
   
    0.474
RMCC_1898
Uncharacterized protein.
   
    0.474
RMCC_0448
Uncharacterized protein.
       0.472
RMCC_4849
Transcriptional regulator, TetR family.
  
     0.415
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.