STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0484Putative uncharacterized protein. (348 aa)    
Predicted Functional Partners:
RMCC_0482
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
 
 0.988
ssuB
Nitrate/sulfonate/bicarbonate ABC transporter ATPase.
 
 
 0.972
RMCC_4550
ABC transporter permease.
 
 
 0.947
RMCC_4551
ABC transporter ATP-binding protein.
 
 
 0.798
RMCC_4547
Cytosine deaminase.
 
     0.787
RMCC_3268
Sulfonate ABC transporter ATP-binding protein.
  
 
 0.701
RMCC_5266
ABC transporter.
  
 
 0.701
RMCC_5386
ABC transporter ATP-binding protein.
  
 
 0.699
RMCC_4567
Ethyl tert-butyl ether degradation protein EthD.
  
    0.679
RMCC_0485
Flavin reductase domain-containing protein.
 
 
  0.671
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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