STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0489ArsR family transcriptional regulator. (116 aa)    
Predicted Functional Partners:
RMCC_5440
HAD-superfamily hydrolase; Belongs to the HAD-like hydrolase superfamily.
   
    0.748
RMCC_0490
Cation transporter ATPase D ctpD.
 
  
 0.719
RMCC_3443
Regulatory protein ArsR.
  
     0.683
RMCC_0110
Regulatory protein ArsR.
  
     0.582
RMCC_0985
Ferric uptake regulation protein furB; Belongs to the Fur family.
  
  
 0.525
RMCC_3236
ArsR family transcriptional regulator.
  
   
 0.519
RMCC_5382
ArsR family transcriptional regulator.
  
     0.519
RMCC_6587
ArsR family transcriptional regulator.
  
   
 0.478
RMCC_0125
ArsR family transcriptional regulator.
  
   
 0.461
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.