STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0542Pyridoxamine 5'-phosphate oxidase-like protein. (148 aa)    
Predicted Functional Partners:
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
   
    0.764
RMCC_0541
Alcohol dehydrogenase adhA.
       0.651
RMCC_0543
Universal stress protein family protein.
  
    0.558
RMCC_3646
RecB family nuclease.
  
     0.519
RMCC_0544
Acetyltransferase, ribosomal protein N-acetylase.
       0.514
RMCC_0540
Uncharacterized protein.
       0.506
RMCC_0539
Acyltransferase, WS/DGAT/MGAT; Belongs to the long-chain O-acyltransferase family.
  
    0.485
RMCC_3047
ATP-grasp superfamily protein.
  
    0.452
RMCC_0577
Uncharacterized protein.
  
  
 0.412
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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