Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
RMCC_0551Putative uncharacterized protein. (324 aa)    
Predicted Functional Partners:
RMCC_0553
Two component LuxR family transcriptional regulator.
 
     0.713
RMCC_0552
Uncharacterized protein.
       0.664
RMCC_4720
Tuberculin related peptide.
  
     0.644
RMCC_0583
UspA domain-containing protein.
  
    0.625
RMCC_0545
Universal stress protein UspA-like protein.
 
    0.623
RMCC_6484
caiB/BaiF family protein.
  
 
 0.610
RMCC_2358
Uncharacterized protein.
  
     0.601
RMCC_2249
Multi-functional enzyme siroheme synthase cysG: uroporphyrin-III C-methyltransferase + precorrin-2 oxidase + ferrochelatase.
  
 
 0.599
RMCC_0550
Uncharacterized protein.
 
   
 0.592
RMCC_4619
uroporphyrin-III C-methyltransferase hemD.
  
 
 0.571
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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