STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0640Amidohydrolase. (554 aa)    
Predicted Functional Partners:
RMCC_0641
Agmatine deiminase; Belongs to the agmatine deiminase family.
 
   
 0.838
RMCC_0639
Amino acid permease-associated region.
 
     0.805
RMCC_2978
Protein affecting phage T7 exclusion by the F plasmid.
  
    0.592
RMCC_0638
Uncharacterized protein.
       0.563
RMCC_0642
TetR family transcriptional regulator.
       0.551
RMCC_0643
Uncharacterized protein.
       0.544
RMCC_0637
Exported protein.
       0.541
RMCC_3616
L-aminopeptidase DmpA.
  
     0.495
RMCC_0644
ABC-type Fe3+-hydroxamate transport system, periplasmic component.
       0.421
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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