STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0641Agmatine deiminase; Belongs to the agmatine deiminase family. (349 aa)    
Predicted Functional Partners:
RMCC_3779
Orn/Lys/Arg decarboxylase.
    
 0.893
RMCC_4558
Agmatinase; Belongs to the arginase family.
    
 0.875
RMCC_0640
Amidohydrolase.
 
   
 0.838
RMCC_0639
Amino acid permease-associated region.
 
   
 0.824
RMCC_5083
Agmatinase; Belongs to the arginase family.
    
 0.814
RMCC_0075
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
 0.809
RMCC_5080
Putative amidohydrolase.
 
 
 0.785
RMCC_4445
Nitrilase/cyanide hydratase and apolipoprotein N -acyltransferase.
 
 
 0.782
RMCC_0080
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
 0.764
RMCC_6620
Orn/Lys/Arg decarboxylase, major region.
    
 0.696
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.