Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0643Uncharacterized protein. (230 aa)    
Predicted Functional Partners:
RMCC_0642
TetR family transcriptional regulator.
 
     0.794
RMCC_3111
Uncharacterized protein.
  
     0.603
RMCC_0644
ABC-type Fe3+-hydroxamate transport system, periplasmic component.
       0.581
RMCC_0639
Amino acid permease-associated region.
       0.544
RMCC_0640
Amidohydrolase.
       0.544
RMCC_0641
Agmatine deiminase; Belongs to the agmatine deiminase family.
       0.544
RMCC_5298
Fumarylacetoacetate (FAA) hydrolase family protein.
     
  0.498
RMCC_6829
HpcE protein.
     
  0.498
RMCC_0645
Uncharacterized protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.
       0.494
RMCC_0816
Fumarylacetoacetate (FAA) hydrolase.
     
  0.494
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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