STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0655Hypothetical protein. (100 aa)    
Predicted Functional Partners:
RMCC_0656
Succinate dehydrogenase membrane anchor subunit.
 
   
 0.850
RMCC_0659
Uncharacterized protein.
     
 0.786
RMCC_0654
peP phosphonomutase.
       0.778
sdhB
Succinate dehydrogenase iron-sulfur protein.
 
   
 0.771
sdhA
Succinate dehydrogenase flavoprotein subunit.
 
   
 0.752
RMCC_6180
Hypothetical protein.
  
     0.734
RMCC_6065
Succinate dehydrogenase.
  
   
 0.700
RMCC_2321
Membrane alanine rich protein.
  
     0.691
RMCC_4224
Uncharacterized protein.
  
     0.656
RMCC_5981
Uncharacterized protein.
  
     0.645
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.