Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RMCC_0396 | RMCC_0662 | Lipopolysaccharide biosynthesis. | Lipopolysaccharide biosynthesis. | 0.914 |
RMCC_0396 | RMCC_0665 | Lipopolysaccharide biosynthesis. | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | 0.724 |
RMCC_0396 | RMCC_0670 | Lipopolysaccharide biosynthesis. | Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. | 0.995 |
RMCC_0396 | RMCC_0673 | Lipopolysaccharide biosynthesis. | dTDP-Rha:a-D-GlcNAc-diphosphoryl polyprenol, a-3 -L-rhamnosyl transferase. | 0.661 |
RMCC_0396 | RMCC_0679 | Lipopolysaccharide biosynthesis. | Transposase IS4 family protein. | 0.836 |
RMCC_0396 | RMCC_5959 | Lipopolysaccharide biosynthesis. | UDP-phosphate galactose phosphotransferase. | 0.997 |
RMCC_0396 | RMCC_5963 | Lipopolysaccharide biosynthesis. | Uncharacterized protein. | 0.931 |
RMCC_0396 | RMCC_5965 | Lipopolysaccharide biosynthesis. | Protein tyrosine kinase. | 0.928 |
RMCC_0516 | RMCC_0665 | Glycosyl transferase family protein. | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | 0.758 |
RMCC_0516 | RMCC_0667 | Glycosyl transferase family protein. | Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. | 0.614 |
RMCC_0516 | RMCC_0670 | Glycosyl transferase family protein. | Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. | 0.914 |
RMCC_0516 | RMCC_0673 | Glycosyl transferase family protein. | dTDP-Rha:a-D-GlcNAc-diphosphoryl polyprenol, a-3 -L-rhamnosyl transferase. | 0.721 |
RMCC_0516 | RMCC_5959 | Glycosyl transferase family protein. | UDP-phosphate galactose phosphotransferase. | 0.906 |
RMCC_0662 | RMCC_0396 | Lipopolysaccharide biosynthesis. | Lipopolysaccharide biosynthesis. | 0.914 |
RMCC_0662 | RMCC_0665 | Lipopolysaccharide biosynthesis. | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | 0.799 |
RMCC_0662 | RMCC_0670 | Lipopolysaccharide biosynthesis. | Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. | 0.995 |
RMCC_0662 | RMCC_0673 | Lipopolysaccharide biosynthesis. | dTDP-Rha:a-D-GlcNAc-diphosphoryl polyprenol, a-3 -L-rhamnosyl transferase. | 0.687 |
RMCC_0662 | RMCC_0679 | Lipopolysaccharide biosynthesis. | Transposase IS4 family protein. | 0.836 |
RMCC_0662 | RMCC_5959 | Lipopolysaccharide biosynthesis. | UDP-phosphate galactose phosphotransferase. | 0.997 |
RMCC_0662 | RMCC_5963 | Lipopolysaccharide biosynthesis. | Uncharacterized protein. | 0.929 |
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