STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0740Isochorismatase hydrolase. (214 aa)    
Predicted Functional Partners:
RMCC_0741
Major facilitator superfamily protein.
 
     0.821
RMCC_0739
Probable hydrolase protein.
 
    
0.820
RMCC_0226
Urea amidolyase.
    
  0.715
RMCC_2033
Isochorismatase hydrolase.
  
  
  0.713
RMCC_0062
Isochorismate synthase.
     
 0.636
RMCC_2862
Nicotinamidase-like amidase.
  
  
 
0.591
RMCC_2957
Isochorismatase hydrolase.
  
  
  0.554
RMCC_0743
Monooxygenase.
  
 
  0.531
pks5-2
Polyketide synthase pks5.
 
 0.531
RMCC_5479
Rhamnulose-1-phosphate aldolase.
  
  0.522
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.