STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCC_0741Major facilitator superfamily protein. (490 aa)    
Predicted Functional Partners:
RMCC_0740
Isochorismatase hydrolase.
 
     0.821
RMCC_0739
Probable hydrolase protein.
 
     0.816
RMCC_3651
Tetracenomycin C resistance and export protein.
  
    0.724
RMCC_4735
Arabinose efflux permease family protein.
  
     0.700
RMCC_2570
Major facilitator transporter.
  
     0.678
RMCC_4330
Major facilitator superfamily transporter.
  
    0.620
RMCC_5109
Drug efflux membrane protein.
  
     0.595
RMCC_0743
Monooxygenase.
    
  0.523
RMCC_0744
Luciferase-like protein.
    
  0.440
RMCC_3046
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.436
Your Current Organism:
Mycolicibacterium canariasense
NCBI taxonomy Id: 228230
Other names: CCUG 47953, CIP 107998, DSM 44828, JCM 15298, M. canariasense, Mycobacterium canariasense, Mycobacterium canariasense Jimenez et al. 2004, Mycolicibacterium canariasense (Jimenez et al. 2004) Gupta et al. 2018, strain 502329
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